Understanding the Rings
- Ring 1 (Outer - Gene Quality): Shows genes colored by assembly quality
- Green (Excellent): ≥95% identity
- Yellow (Good): 85-95% identity
- Orange (Fair): 70-85% identity
- Red (Poor): <70% identity
- Ring 2 (Middle - Alignment Status): Shows assembly coverage status
- Green (Complete): Single coverage
- Orange (Duplicated): Multiple coverage
- Red (Inverted): Reverse strand alignment
- Gray (Missing): No coverage
- Ring 3 (Inner - Contig Mapping): Shows which assembly contigs map to each region
Interactive Features
- Note: Gene clicking feature is disabled (--no-gene-alignments flag was used)
- Hover over any ring to see detailed information