Circular Plot Navigation Guide

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Understanding the Rings

  • Ring 1 (Outer - Gene Quality): Shows genes colored by assembly quality
    • Green (Excellent): ≥95% identity
    • Yellow (Good): 85-95% identity
    • Orange (Fair): 70-85% identity
    • Red (Poor): <70% identity
  • Ring 2 (Middle - Alignment Status): Shows assembly coverage status
    • Green (Complete): Single coverage
    • Orange (Duplicated): Multiple coverage
    • Red (Inverted): Reverse strand alignment
    • Gray (Missing): No coverage
  • Ring 3 (Inner - Contig Mapping): Shows which assembly contigs map to each region

Interactive Features

  • Note: Gene clicking feature is disabled (--no-gene-alignments flag was used)
  • Hover over any ring to see detailed information