Understanding the Rings

• Ring 1 (Outer - Gene Quality): Shows genes colored by assembly quality
  • Green (Excellent): ≥95% identity
  • Yellow (Good): 85-95% identity
  • Orange (Fair): 70-85% identity
  • Red (Poor): <70% identity
• Ring 2 (Middle - Alignment Status): Shows assembly coverage status
  • Green (Complete): Single coverage
  • Orange (Duplicated): Multiple coverage
  • Red (Inverted): Reverse strand alignment
  • Gray (Missing): No coverage
• Ring 3 (Inner - Contig Mapping): Shows which assembly contigs map to each region

Interactive Features

• Note: Gene clicking feature is disabled (--no-gene-alignments flag was used)
• Hover over any ring to see detailed information